Enforcement Rules of the Fisheries Act Article 8

Any application for operating fishing right fishery shall be filed with the municipal or county (city) competent authority where the fishing ground is located.Any application for operating directed and recreational fisheries shall be filed with the municipal or county (city) competent authority where the approval for vessel registration is concerned.
中文原文 漁業法施行細則第8條
漁業權漁業經營之申請,應向漁場所在地之直轄市或縣(市)主管機關為之。
特定漁業及娛樂漁業經營之申請,應向船籍所在地之直轄市或縣(市)主管機關為之。

English translation for reference only; the Chinese text prevails. Not legal advice.